Home / Resources / Software / CellNetOptimizer

• Models
  • Aldridge et al. 2006
  • Chen et al. 2008
  • Eydgahi et al. 2012
• Data
  • Gaudet et al. 2005
  • Alexopoulos et al. 2010
  • Saez-Rodriguez et al. 2009
• Software
  • DataRail
  • CellNetOptimizer
• Facilities

CellNetOptimizer

CellNetOptimizer (CNO) is a MATLAB toolbox for creating logic-based models of signal transduction networks, and training them agains high-throughput biochemical data. CNO can be used independently, or together with DataRail a complementary MATLAB toolbox for managing, transforming and visualizing data.

CNO is free to download and use under the Creative Commons Attribution-No Derivative Works 3.0 United States License.

Please  use the following citation to refer to CNO:

J. Saez-Rodriguez*, L. G. Alexopoulos*, J. Epperlein, R. Samaga, D. A. Lauffenburger, S. Klamt and P. K. Sorger. Discrete logic modeling as a means to link protein signaling networks with functional analysis of mammalian signal transduction, Molecular Systems Biology, 5:331, 2009. [* these authors contributed equally to this work]

Click here to download the current version of CellNetOptimizer

This work is licensed under a Creative Commons Attribution-No Derivative Works 3.0 United States License.